Bioinformatics
Here is a list of publications that are related to our research in bioinformatics.
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Mining bioprocess data: opportunities and challenges.
Salim Charaniya, Wei-Shou Hu, and George Karypis. Trends in Biotechnology, 2009.
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Improved estimation of structure predictor quality.
Kevin W. Deronne and George Karypis. BMC Structural Biology, 9:41, 2009.
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Mining Transcriptome Data for Function-Trait Relationship of Hyper Productivty of Recombinant Antibody.
Salim Charaniya, George Karypis, and We-Shou Hu. Biotechnology & Bioengineering, Vol. 102, No. 6, pp. 1654-1669, 2009.
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Genome alignments using MPI-LAGAN.
Ruinan Zhang, Huzefa Rangwala, and George Karypis. International Conference on Bioinformatics and Biomedicine, 2008.
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TOPTMH: Topology Predictor for Transmembrane a-Helices.
Rezwan Ahmed, Huzefa Rangwala, and George Karypis. ECML-PKDD, 2008.
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Improving Homology Models for Protein-Ligand Binding Sites.
Chris Kauffman, Huzefa Rangwala, and George Karypis. LSS Computational systems Bioinformatics Conference (CSB), 2008.
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Improved prediction of protein model quality.
Kevin W. DeRonne and George Karypis. CSE TR# 08-002, 2008.
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An Analysis of Information Content Present in Protein-DNA Interactions.
Chris Kauffman and George Karypis. Pacific Symposium on Biocomputing, 2008.
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fRMSDAlign: Protein Sequence Alignment Using Predicted Local Structure Information.
Huzefa Rangwala and George Karypis. 6th Asia Pacific Bioinformatics Conference, 2008.
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Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor.
Salim Charaniya, Sarika Mehra, Wei Lian, Karthik P. Jayapal, George Karypis, Wei-Shou Hu. Nucleic Acids Research, 35(21):7222-36., 2007.
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A Generalized Framework for Protein Sequence Annotation.
Huzefa Rangwala, Christopher Kauffman, and George Karypis. UMN TR# 07-023, 2007.
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