Bioinformatics

Here is a list of publications that are related to our research in bioinformatics.

  1. Selective Markov Models for Predicting Web-Page Accesses.

    Mukund Deshpande and George Karypis. ACM Transactions on Internet Technology, Vol. 4, Issue 2, pp. 163 - 184, 2004.

  1. Expression Levels for Many Genes in Human Peripheral Blood Cells are Highly Sensitive to ex Vivo Incubation.

    E. Baechler, F. Batliwalla, G. Karypis, P. Gaffney, K. Moser, W. Ortmann, K. Espe, S. Balasubramanian, K. Hughes, J. Chan, A. Begovich, S. Chang, P. Gregersen, and T. Behrens. Genes and Immunity, Vo. 5, No. 5, pp. 347 - 353, 2004.

  1. A Boolean Algorithm for Reconstructing the Structure of Regulatory Networks.

    Sarika Mehra, Wei-Shou Hu, and George Karypis. Metabolic Engineering, Vol. 6. No. 4, pp. 326 - 339, 2004.

  1. Finding Functionally Related Genes by Local and Global Analysis of MEDLINE Abstracts.

    Sigve Nakken, Christopher Kauffman, and George Karypis. SIGIR04 Bio Workshop: Search and Discovery in Bioinformatics, 2004.

  1. Interferon-Inducible Gene Expression Signature in Peripheral Blood Cells of Patients with Severe SLE.

    E. Baechler, F. Batliwalla, G. Karypis, P. Gaffney, W. Ortmann, K. Espe, K. Shark, W. Grande, K. Hughes, V. Kapur, P. Gregersen, and T. Behrens. Proceedings of the National Academies of Sciences (PNAS), Vol. 100, No. 5, pp. 2610 - 2615, 2003.

  1. Prediction of Contact Maps Using Support Vector Machines.

    Ying Zhao and George Karypis. 3rd IEEE International Conference on Bioinformatics and Bioengineering (BIBE), pp. 26 - 33, 2003.

  1. wCLUTO: A Web-enabled Clustering Toolkit.

    Matthew Rasmussen, Mukund Deshpande, George Karypis, James Johnson, John Crow, Ernest Retzel. Plant Physiology, Vol. 133, pp. 510 - 516, 2003.

  1. Frequent Sub-structure Based Approaches for Classifying Chemical Compounds.

    Mukund Deshpande, Michihiro Kuramochi, and George Karypis. 3nd IEEE Conference on Data Mining (ICDM), pp. 35-42, 2003.

  1. Clustering in Life Sciences.

    Ying Zhao and George Karypis. In <em>Functional Genomics: Methods and Protocols</em>, M. Brownstein, A. Khodursky and D. Conniffe (editors). Humana Press, 2003.

  1. Automated Approaches for Classifying Structures.

    Mukund Deshpande, Michihiro Kuramochi, and George Karypis. SIGKDD Workshop on Bioinformatics, BIOKDD, 2002.

  1. Evaluation of Techniques for Classifying Biological Sequences.

    Mukund Deshpande and George Karypis. 6th Pacific-Asia Conference on Knowledge Discovery (PAKDD), pp. 417-431, 2002.

  1. Selective Markov Models for Predicting Web-Page Accesses.

    Mukund Deshpande and George Karypis. 1st SIAM Conference on Data Mining, 2001.