Updated on 5/25/2007
You may want to try our new
server that besides YASSPP-based secondary structure prediction also provides predictions for other structural and functional properties of a protein's residues.
A name by which you can easily identify this sequence.
The amino acid sequence whose secondary structure will like to predict.
Valid amino acid codes:
Spaces in the sequence are not significant.
A valid email address to email back the prediction results.
Input Coding Scheme
Selects among the different pre-trained YASSPP models. Reasonable defaults have already being selected, but you can always experiment with the different choices.
Karypis G. "YASSPP: Better kernels and coding schemes lead to improvements in SVM-based secondary structure prediction".
Proteins: Structure, Function, and Bioinformatics, Vol 64, Issue 3, pp. 575-586, 2006.