Publications Related to Protein structure prediction

  1. A kernel framework for protein residue annotation.

    Huzefa Rangwala, Christopher Kauffman, and George Karypis. PAKDD, pp. 439-451, 2009.

  1. TOPTMH: Topology Predictor for Transmembrane alpha-Helices.

    Rezwan Ahmed, Huzefa Rangwala, and George Karypis. Journal of Bioinformatics and Computational Biology, 2009.

  1. A Generalized Framework for Protein Sequence Annotation.

    Huzefa Rangwala, Christopher Kauffman, and George Karypis. UMN TR# 07-023, 2007.

  1. YASSPP: Better Kernels and Coding Schemes Lead to Improvements in SVM-basedSecondary Structure Prediction.

    George Karypis. PROTEINS: Structure, Function, and Bioinformatics, 2006.

  1. Profile Based Direct Kernels for Remote Homology Detection and Fold Recognition.

    Huzefa Rangwala and George Karypis. Bioinformatics, Vol. 31, No. 23, pp. 4239 - 4247, 2005.

  1. Prediction of Contact Maps Using Support Vector Machines.

    Ying Zhao and George Karypis. 3rd IEEE International Conference on Bioinformatics and Bioengineering (BIBE), pp. 26 - 33, 2003.