Publications Related to Bioinformatics

  1. Detecting significant genotype–phenotype association rules in bipolar disorder: market research meets complex genetics.

    René Breuer, Manuel Mattheisen, Josef Frank, Bertram Krumm, Jens Treutlein, Layla Kassem, Jana Strohmaier, Stefan Herms, Thomas W. Mühleisen, Franziska Degenhardt, Sven Cichon, Markus M. Nöthen, George Karypis, John Kelsoe, Tiffany Greenwood, Caroline Nievergelt, Paul Shilling, Tatyana Shekhtman, Howard Edenberg, David Craig, Szabolcs Szelinger, John Nurnberger, Elliot Gershon, Ney Alliey-Rodriguez, Peter Zandi, Fernando Goes, Nicholas Schork, Erin Smith, Daniel Koller, Peng Zhang, Judith Badner, Wade Berrettini, Cinnamon Bloss, William Byerley, William Coryell, Tatiana Foroud, Yirin Guo, Maria Hipolito, Brendan Keating, William Lawson, Chunyu Liu, Pamela Mahon, Melvin McInnis, Sarah Murray, Evaristus Nwulia, James Potash, John Rice, William Scheftner, Sebastian Zöllner, Francis J. McMahon, Marcella Rietschel, Thomas G. Schulze. International Journal of Bipolar Disorders, Volume 6, Issue 1, 2018.

  1. Augmenting Chinese hamster genome assembly by identifying regions of high confidence.

    Vishwanathan N., Bandyopadhyay A. Fu H. Sharma M., Johnson K., Mudge J. Ramaraj T., Onsongo G., Silverstein K., Jacob N., Le H., Karypis G., and Hu W.. Biotechnology Journal, 11, 2016.

  1. Exploring the Transcriptome Space of a Recombinant BHK Cell Line Through Next Generation Sequencing.

    Kathryn C. Johnson, Andrew Yongky, Nandita Vishwanathan, Nitya M. Jacob, Karthik P. Jayapal, Chetan T. Goudar, George Karypis, Wei-Shou Hu. Biotechnology and Bioengineering, 111: 770–781, 2014.

  1. Pareto Optimal Pairwise Sequence Alignment.

    Kevin DeRonne and George Karypis. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2013.

  1. Multivariate analysis of cell culture bioprocess data--lactate consumption as process indicator.

    Huong Le and Santosh Kabbur and Luciano Pollastrini and Ziran Sun and Keri Mills and Kevin Johnson and George Karypis and Wei-Shou Hu. Journal of Biotechnology, 162, pp. 210-223, 2012.

  1. Function Genomics of Nectar Production in Brassicaceae.

    R. Bender, P. Klinkenberg, Z. Jiang, B. Bauer, G. Karypis, N. Nguyen, M. Perera, B. Nikolau, and C. Carter. Flora: Morphology, Distribution, Functional Ecology of Plants Volume 207, Issue 7, pp. 491-496, 2012.

  1. Computational Tools for Protein-DNA Interactions.

    Chris Kauffman and George Karypis. WIREs Data Mining and Knowledge Discovery, 2(1): 14-28, 2012.

  1. Genome-wide Inference of Regulatory Networks in Streptomyces Coelicolor.

    Marlene Castro-Melchor, Salim Charaniya, George Karypis, Eriko Takano, and Wei-Shou Hu. BMC Genomics, Vol. 11, pp. 578, 2010.

  1. Mining manufacturing data for discovery of high productivity process characteristics.

    Salim Charaniya, Huong Le, Huzefa Rangwala, Keri Mills, Kevin Johnson, George Karypis, and Wei-Shou Hu. Journal of Biotechnology, Vol. 147, pp. 186—197, 2010.

  1. A kernel framework for protein residue annotation.

    Huzefa Rangwala, Christopher Kauffman, and George Karypis. PAKDD, pp. 439-451, 2009.

  1. TOPTMH: Topology Predictor for Transmembrane alpha-Helices.

    Rezwan Ahmed, Huzefa Rangwala, and George Karypis. Journal of Bioinformatics and Computational Biology, 2009.