Complete list of publications

  1. An Analysis of Information Content Present in Protein-DNA Interactions.

    Chris Kauffman and George Karypis. Pacific Symposium on Biocomputing, 2008.

  1. fRMSDAlign: Protein Sequence Alignment Using Predicted Local Structure Information.

    Huzefa Rangwala and George Karypis. 6th Asia Pacific Bioinformatics Conference, 2008.

  1. Interleaving of Gate Sizing and Constructive Placement for Predictable Performance.

    Sungjae Kim, Eugene Shragowitz, George Karypis, and Rung-Bin Lin . International Symposium on VLSI Design, Automation, and Test, pp. 1-4, 2007.

  1. Out-of-Core Coherent Closed Quasi-Clique Mining from Large Dense Graph Databases.

    Zhiping Zeng, Jianyong Wang, Lizhu Zhou, and George Karypis. ACM Transactions on Database Systems, Vol 32, Issue 2, 2007.

  1. Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor.

    Salim Charaniya, Sarika Mehra, Wei Lian, Karthik P. Jayapal, George Karypis, Wei-Shou Hu. Nucleic Acids Research, 35(21):7222-36., 2007.

  1. A Generalized Framework for Protein Sequence Annotation.

    Huzefa Rangwala, Christopher Kauffman, and George Karypis. UMN TR# 07-023, 2007.

  1. Comparison of Descriptor Spaces for Chemical Compound Retrieval and Classification.

    Nikil Wale, Ian Watson, and George Karypis. Knowledge and Information Systems, 2007.

  1. Methods for Effective Virtual Screening and Scaffold-Hopping in Chemical Compounds.

    Nikil Wale and George Karypis. Computational Systems Biology (CSB), pp. 403-416, 2007.

  1. fRMSDPred: Predicting local rmsd between structural fragments using sequence information.

    Huzefa Rangwala and George Karypis. Computational Systems Biology (CSB), pp. 311-322, 2007.

  1. Effective Optimization Algorithms for Fragment-Assembly Based Protein Structure Prediction.

    Kevin DeRonne and George Karypis. Journal of Bioinformatics and Computational Biology (JBCB), 2007.

  1. A Multi-Level Parallel Implementation of a Program for Finding Frequent Patterns in a Large Sparse Graph.

    Steve Reinhardt and George Karypis. 12th International Workshop on High-Level Parallel Programming Models and Supportive Environments (HIPS'07), 2007.

  1. Discriminating Subsequence Discovery for Sequence Clustering.

    Jianyong Wang, Yuzhou Zhang, Lizhu Zhou, George Karypis, Charu C. Aggarwal. SIAM International Conference on Data Mining (SDM), 2007.