Complete list of publications

  1. Architecture Aware Partitioning Algorithms.

    Irene Moulitsas and George Karypis. 8th Intl. Conference on Algorithms and Architectures for Parallel Processing (ICA3PP), 2008.

  1. Improving Homology Models for Protein-Ligand Binding Sites.

    Chris Kauffman, Huzefa Rangwala, and George Karypis. LSS Computational systems Bioinformatics Conference (CSB), 2008.

  1. Improved prediction of protein model quality.

    Kevin W. DeRonne and George Karypis. CSE TR# 08-002, 2008.

  1. A Segment-based Approach To Clustering Multi-Topic Documents.

    Andrea Tagarelli and George Karypis. Text Mining Workshop, SIAM Datamining Conference, 2008.

  1. Towards a Scalable kNN CF Algorithm: Exploring Effective Applications of clustering.

    Al Mamunur Rashid, Shyong K. Lam, Adam LaPitz, George Karypis, and John Riedl. In “Web Mining and Web Usage Analysis”, O. Nasraoui, et. al. (editors), Springer, 2008.

  1. An Analysis of Information Content Present in Protein-DNA Interactions.

    Chris Kauffman and George Karypis. Pacific Symposium on Biocomputing, 2008.

  1. fRMSDAlign: Protein Sequence Alignment Using Predicted Local Structure Information.

    Huzefa Rangwala and George Karypis. 6th Asia Pacific Bioinformatics Conference, 2008.

  1. Interleaving of Gate Sizing and Constructive Placement for Predictable Performance.

    Sungjae Kim, Eugene Shragowitz, George Karypis, and Rung-Bin Lin . International Symposium on VLSI Design, Automation, and Test, pp. 1-4, 2007.

  1. Out-of-Core Coherent Closed Quasi-Clique Mining from Large Dense Graph Databases.

    Zhiping Zeng, Jianyong Wang, Lizhu Zhou, and George Karypis. ACM Transactions on Database Systems, Vol 32, Issue 2, 2007.

  1. Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor.

    Salim Charaniya, Sarika Mehra, Wei Lian, Karthik P. Jayapal, George Karypis, Wei-Shou Hu. Nucleic Acids Research, 35(21):7222-36., 2007.

  1. A Generalized Framework for Protein Sequence Annotation.

    Huzefa Rangwala, Christopher Kauffman, and George Karypis. UMN TR# 07-023, 2007.

  1. Comparison of Descriptor Spaces for Chemical Compound Retrieval and Classification.

    Nikil Wale, Ian Watson, and George Karypis. Knowledge and Information Systems, 2007.