Complete list of publications

  1. Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor.

    Salim Charaniya, Sarika Mehra, Wei Lian, Karthik P. Jayapal, George Karypis, Wei-Shou Hu. Nucleic Acids Research, 35(21):7222-36., 2007.

  1. A Generalized Framework for Protein Sequence Annotation.

    Huzefa Rangwala, Christopher Kauffman, and George Karypis. UMN TR# 07-023, 2007.

  1. Comparison of Descriptor Spaces for Chemical Compound Retrieval and Classification.

    Nikil Wale, Ian Watson, and George Karypis. Knowledge and Information Systems, 2007.

  1. Methods for Effective Virtual Screening and Scaffold-Hopping in Chemical Compounds.

    Nikil Wale and George Karypis. Computational Systems Biology (CSB), pp. 403-416, 2007.

  1. fRMSDPred: Predicting local rmsd between structural fragments using sequence information.

    Huzefa Rangwala and George Karypis. Computational Systems Biology (CSB), pp. 311-322, 2007.

  1. Effective Optimization Algorithms for Fragment-Assembly Based Protein Structure Prediction.

    Kevin DeRonne and George Karypis. Journal of Bioinformatics and Computational Biology (JBCB), 2007.

  1. A Multi-Level Parallel Implementation of a Program for Finding Frequent Patterns in a Large Sparse Graph.

    Steve Reinhardt and George Karypis. 12th International Workshop on High-Level Parallel Programming Models and Supportive Environments (HIPS'07), 2007.

  1. Discriminating Subsequence Discovery for Sequence Clustering.

    Jianyong Wang, Yuzhou Zhang, Lizhu Zhou, George Karypis, Charu C. Aggarwal. SIAM International Conference on Data Mining (SDM), 2007.

  1. ClustKNN: A Highly Scalable Hybrid Model- and Memory-Based CF Algorithm.

    Al Mamunur Rashid, Shyong K. Lam, George Karypis, and John Riedl. WEBKDD, 2006.

  1. Coherent Closed Quasi-Clique Discovery from Large Dense Graph Databases.

    Zhiping Zeng, Jianyong Wang, Lizhu Zhou, and George Karypis. 12th International Conference on Knowledge and Data Discovery (KDD), 2006.

  1. On Mining Instance-Centric Classification Rules.

    Jianyong Wang and George Karypis. IEEE Transactions on Knowledge and Data Enigneering, 2006.

  1. Building Multiclass Classifiers for Remote Homology Detection and Fold Recognition.

    Huzefa Rangwala and George Karypis. BMC Bioinformatics, Jan 15;23(2):e17-23., 2006.