Bioinformatics
Here is a list of publications that are related to our research in bioinformatics.
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Methods for Effective Virtual Screening and Scaffold-Hopping in Chemical Compounds.
Nikil Wale and George Karypis. Computational Systems Biology (CSB), pp. 403-416, 2007.
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fRMSDPred: Predicting local rmsd between structural fragments using sequence information.
Huzefa Rangwala and George Karypis. Computational Systems Biology (CSB), pp. 311-322, 2007.
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Effective Optimization Algorithms for Fragment-Assembly Based Protein Structure Prediction.
Kevin DeRonne and George Karypis. Journal of Bioinformatics and Computational Biology (JBCB), 2007.
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Building Multiclass Classifiers for Remote Homology Detection and Fold Recognition.
Huzefa Rangwala and George Karypis. BMC Bioinformatics, Jan 15;23(2):e17-23., 2006.
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Effective Optimization Algorithms for Fragment-assembly based Protein Structure Prediction.
Kevin W. DeRonne and George Karypis. Computational Systems Bioinformatics Conference (CSB), 2006.
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Incremental Window-based Protein Sequence Alignment Algorithms.
Huzefa Rangwala and George Karypis. 5th European Conference on Computational Biology (ECCB), 2006.
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Protein Structure Prediction using String Kernels.
Huzefa Rangwala, Kevin DeRonne, and George Karypis. UMN CSE 06-005, 2006.
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Profile Based Direct Kernels for Remote Homology Detection and Fold Recognition.
Huzefa Rangwala and George Karypis. Bioinformatics, Vol. 31, No. 23, pp. 4239 - 4247, 2005.
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Data Clustering in Life Sciences.
Ying Zhao and George Karypis. Molecular Biotechnology, 31(1), pp. 55--80, 2005.
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Gene Classification using Expression Profiles: A Feasibility Study.
Michihiro Kuramochi and George Karypis. International Journal on Artificial Intelligence Tools. Vol. 14, No. 4, pp. 641 - 660, 2005.
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