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Bioinformatics

Here is a list of publications that are related to our research in bioinformatics.

  1. A kernel framework for protein residue annotation.

    Huzefa Rangwala, Christopher Kauffman, and George Karypis.&nbsp PAKDD, pp. 439-451, 2009.

  1. TOPTMH: Topology Predictor for Transmembrane alpha-Helices.

    Rezwan Ahmed, Huzefa Rangwala, and George Karypis.&nbsp Journal of Bioinformatics and Computational Biology, 2009.

  1. Mining bioprocess data: opportunities and challenges.

    Salim Charaniya, Wei-Shou Hu, and George Karypis.&nbsp Trends in Biotechnology, 2009.

  1. Improved estimation of structure predictor quality.

    Kevin W. Deronne and George Karypis.&nbsp BMC Structural Biology, 9:41, 2009.

  1. Mining Transcriptome Data for Function-Trait Relationship of Hyper Productivty of Recombinant Antibody.

    Salim Charaniya, George Karypis, and We-Shou Hu.&nbsp Biotechnology & Bioengineering, Vol. 102, No. 6, pp. 1654-1669, 2009.

  1. LIBRUS: Combined Machine Learning and Homology Information for Sequence-based Ligand-Binding Residue Prediction.

    Chris Kauffman and George Karypis.&nbsp Bioinformatics, 2009.

  1. Genome alignments using MPI-LAGAN.

    Ruinan Zhang, Huzefa Rangwala, and George Karypis.&nbsp International Conference on Bioinformatics and Biomedicine, 2008.

  1. TOPTMH: Topology Predictor for Transmembrane a-Helices. Rezwan Ahmed, Huzefa Rangwala, and George Karypis.  ECML-PKDD, 2008.

  1. Improving Homology Models for Protein-Ligand Binding Sites. Chris Kauffman, Huzefa Rangwala, and George Karypis.  LSS Computational systems Bioinformatics Conference (CSB), 2008.

  1. Improved prediction of protein model quality. Kevin W. DeRonne and George Karypis.  CSE TR# 08-002, 2008.

  1. An Analysis of Information Content Present in Protein-DNA Interactions. Chris Kauffman and George Karypis.  Pacific Symposium on Biocomputing, 2008.

  1. fRMSDAlign: Protein Sequence Alignment Using Predicted Local Structure Information. Huzefa Rangwala and George Karypis.  6th Asia Pacific Bioinformatics Conference, 2008.
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