Bioinformatics

Here is a list of publications that are related to our research in bioinformatics.

  1. A kernel framework for protein residue annotation.

    Huzefa Rangwala, Christopher Kauffman, and George Karypis.&nbsp PAKDD, pp. 439-451, 2009.

  1. TOPTMH: Topology Predictor for Transmembrane alpha-Helices.

    Rezwan Ahmed, Huzefa Rangwala, and George Karypis.&nbsp Journal of Bioinformatics and Computational Biology, 2009.

  1. Mining bioprocess data: opportunities and challenges.

    Salim Charaniya, Wei-Shou Hu, and George Karypis.&nbsp Trends in Biotechnology, 2009.

  1. Improved estimation of structure predictor quality.

    Kevin W. Deronne and George Karypis.&nbsp BMC Structural Biology, 9:41, 2009.

  1. Mining Transcriptome Data for Function-Trait Relationship of Hyper Productivty of Recombinant Antibody.

    Salim Charaniya, George Karypis, and We-Shou Hu.&nbsp Biotechnology & Bioengineering, Vol. 102, No. 6, pp. 1654-1669, 2009.

  1. Genome alignments using MPI-LAGAN.

    Ruinan Zhang, Huzefa Rangwala, and George Karypis.&nbsp International Conference on Bioinformatics and Biomedicine, 2008.

  1. TOPTMH: Topology Predictor for Transmembrane a-Helices. Rezwan Ahmed, Huzefa Rangwala, and George KarypisECML-PKDD, 2008.

  1. Improving Homology Models for Protein-Ligand Binding Sites. Chris Kauffman, Huzefa Rangwala, and George KarypisLSS Computational systems Bioinformatics Conference (CSB), 2008.

  1. Improved prediction of protein model quality. Kevin W. DeRonne and George KarypisCSE TR# 08-002, 2008.

  1. An Analysis of Information Content Present in Protein-DNA Interactions. Chris Kauffman and George KarypisPacific Symposium on Biocomputing, 2008.

  1. fRMSDAlign: Protein Sequence Alignment Using Predicted Local Structure Information. Huzefa Rangwala and George Karypis6th Asia Pacific Bioinformatics Conference, 2008.